Basic Information
Locus ID:
BniB08g038760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
pre-mRNA-processing factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 23596747 | 23598026 | + | BniB08g038760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 41,749.34 Da | 42.77 | 91.05 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48452 | TPR-like | 89 | 288 | 1.69E-20 | IPR011990 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 80 | 6.06E-6 | IPR029071 |
| SUPERFAMILY | SSF48452 | TPR-like | 300 | 359 | 1.04E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 156 | 369 | 1.1E-26 | IPR011990 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.2E-5 | - |
| SMART | SM00386 | hat_new_1 | 299 | 331 | 0.91 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 215 | 247 | 3.0 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 249 | 280 | 180.0 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 333 | 365 | 32.0 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 147 | 179 | 0.023 | IPR003107 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 80 | 10.614717 | IPR000626 |
| Coils | Coil | Coil | 244 | 264 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03430.1 | pre-mRNA splicing factor-related. Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. | 0 |
| RefSeq | XP_033142047.1 | protein STABILIZED1 [Brassica rapa] | 0 |
| Q9ZT71 | Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2ZSE9 | Ubiquitin-like domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24228 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25531 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah023281, Ah028855 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170520 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg27048, Sbi_jg33481, Sbi_jg33507 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8188 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002892 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73335, Sgl76863 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007070, gene:ENSEOMG00000034675 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0006900, CQ.Regalona.r1.2BG0022530 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G03380 |
| Arecaceae | Cocos nucifera | 1 | scaffold005346G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721117, gene-LOC120109931 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1475.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G11693 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03430.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028386m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03490.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038760.2N, BniB08g046250.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2556, Ceq02G2588 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2641, Cgl02G2671 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g02390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0061s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g08870 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1882 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029444 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.2502, BH01.1898, BH05.2584, CH01.2008, CH05.2694 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112490, gene-QOZ80_2BG0165860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0047130.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011796, gene-QYE76_011867 |
| Poaceae | Oryza coarctata | 3 | Oco01G007000, Oco19G007150, Oco20G007110 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g15860.1, LOC_Os10g35550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G187500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302149, Pt_Chr0502765 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G001970 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G306700, Tel4E01G078000, Tel4E01G540400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG025960, gene_TRIDC1BG031020 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G170500.1, TraesCS1D02G168200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb137760_P001, Zm00001eb410870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43958 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15215 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1650, evm.TU.LG22.539 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g10210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1381, evm.TU.Scaffold_9_RagTag.1261 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11897, nbisL1-mrna-20906 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2825, nbisL1-mrna-8710 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11080 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.326 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014081 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20820 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15367, nbisL1-mrna-4810 |
| Salicaceae | Populus euphratica | 1 | populus_peu16870 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616644 |
| Solanaceae | Solanum chilense | 1 | SOLCI002779600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026062 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15112 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1856 |
| Zosteraceae | Zostera marina | 1 | Zosma03g28440.v3.1 |