Basic Information
Locus ID:
BniB08g038470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 23340074 | 23342572 | - | BniB08g038470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 55,191.66 Da | 40.95 | 67.17 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 290 | 5.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 225 | 248 | 7.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 148 | 474 | 1.47E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 148 | 498 | 4.0E-95 | IPR015943 |
| SMART | SM00320 | WD40_4 | 333 | 371 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 481 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 8.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 187 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 437 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 248 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 331 | 32.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 196 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 299 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 258 | 292 | 9.731054 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 192 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 216 | 257 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 216 | 251 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 235 | 249 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 277 | 291 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 235 | 249 | 9.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 277 | 291 | 9.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 358 | 372 | 9.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 104 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05410.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a nucleolar protein with seven WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis. YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis. | 0 |
| RefSeq | XP_013705910.2 | U3 snoRNP-associated protein-like YAO [Brassica napus] | 0 |
| Q9M0V4 | U3 snoRNP-associated protein-like YAO OS=Arabidopsis thaliana OX=3702 GN=YAO PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WIB7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002559 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38774 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11220 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016088 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27093, Sbi_jg33449 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8131 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020534 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl43935 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012101, gene:ENSEOMG00000034483 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0010330, CQ.Regalona.r1.8BG0012890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30214040 |
| Apiaceae | Apium graveolens | 1 | Ag7G00970 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020630, COCNU_14G008790 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703641, gene-LOC103710502 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.227.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G17805, Ftri5G06660 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G05410.1, AT4G21130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028589m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03680.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038470.2N, BniB08g046630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1052 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1189, Cgl04G1196 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g03230, gene.Cymno17g00090 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0191s00014.v1.0, Dusal.0191s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5329 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.60 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004265 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24833 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.1257, BH01.1468, CH05.2895, CH06.2662 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0224350, gene-QOZ80_3AG0236250 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0428990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001026 |
| Poaceae | Oryza coarctata | 2 | Oco05G018830, Oco06G019620 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g42770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G145000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704427, Pt_Chr0704431 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G009440, Chr04G024810, Chr07G023640, Chr12G027580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G099000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG006570, gene_TRIDC5BG007670 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G043100.1, TraesCS5D02G051600.1 |
| Poaceae | Zea mays | 2 | Zm00001eb050650_P001, Zm00001eb218720_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20461, nbis-gene-39603 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3196, Zma_g874 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1112 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.969 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16815 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19462 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17268 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012196 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8634 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22974 |
| Salicaceae | Populus euphratica | 2 | populus_peu13632, populus_peu22795 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622025 |
| Solanaceae | Solanum chilense | 1 | SOLCI000504900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008853 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14391 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3900 |
| Zosteraceae | Zostera marina | 1 | Zosma06g12600.v3.1 |