Basic Information
Locus ID:
BniB08g038300.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 23219652 | 23221828 | + | BniB08g038300.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 67,944.93 Da | 52.60 | 68.89 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 438 | 485 | 8.5E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 73 | 121 | 2.7E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 33 | 64 | 4.1E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 133 | 176 | 3.6E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 186 | 233 | 7.8E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 387 | 427 | 5.0E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 268 | 317 | 3.3E-8 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 410 | 491 | 6.38E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 46 | 121 | 5.98E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 211 | 330 | 3.59E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 104 | 189 | 5.68E-24 | - |
| SMART | SM00109 | c1_12 | 25 | 74 | 2.7E-4 | IPR002219 |
| SMART | SM00109 | c1_12 | 135 | 181 | 3.9 | IPR002219 |
| SMART | SM00249 | PHD_3 | 38 | 99 | 3.7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 149 | 208 | 1.1 | IPR001965 |
| SMART | SM00249 | PHD_3 | 456 | 518 | 2.7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 401 | 441 | 13.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 289 | 350 | 5.4 | IPR001965 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 24 | 74 | 7.9808 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45730.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_019096487.1 | PREDICTED: uncharacterized protein LOC104767990 [Camelina sativa] | 0 |
| TrEMBL | A0A8X8BEF7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002568 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |