Basic Information
Locus ID:
BniB08g038020.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 22892325 | 22895030 | + | BniB08g038020.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 73,020.14 Da | 42.90 | 94.07 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 346 | 607 | 2.46728E-96 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 31 | 121 | 1.0E-7 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 151 | 242 | 5.2E-9 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 342 | 540 | 2.7E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 319 | 607 | 1.75E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 24 | 124 | 3.2E-10 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 142 | 245 | 1.1E-18 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 416 | 613 | 3.8E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 299 | 415 | 2.7E-36 | - |
| SMART | SM00220 | serkin_6 | 340 | 607 | 7.2E-37 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 20 | 125 | 12.77749 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 340 | 612 | 38.633183 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 138 | 245 | 16.778519 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 346 | 368 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 461 | 473 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04510.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 38. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_048632031.1 | cysteine-rich receptor-like protein kinase 38 [Brassica napus] | 0 |
| Q9XEC8 | Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana OX=3702 GN=CRK38 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3P6AJC1 | Cysteine-rich receptor-like protein kinase 25 OS=Brassica oleracea OX=3712 GN=BOLC3T15946H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04490.1, AT4G04510.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028498m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038020.2N, BniB08g038050.2N |