Basic Information
Locus ID:
BniB08g037990.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 22875192 | 22877590 | + | BniB08g037990.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 71,687.19 Da | 45.66 | 85.83 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 353 | 609 | 3.62613E-100 | - |
| Pfam | PF00069 | Protein kinase domain | 349 | 608 | 5.7E-50 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 34 | 127 | 2.5E-8 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 159 | 244 | 1.1E-9 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 331 | 620 | 5.53E-81 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 26 | 130 | 8.6E-11 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 310 | 421 | 5.3E-35 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 152 | 248 | 1.4E-18 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 422 | 632 | 2.1E-60 | - |
| SMART | SM00220 | serkin_6 | 347 | 612 | 1.6E-43 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 21 | 130 | 12.99474 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 142 | 248 | 15.529327 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 347 | 618 | 39.707367 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 353 | 375 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 467 | 479 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04570.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 40. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_013674901.1 | putative cysteine-rich receptor-like protein kinase 39 [Brassica napus] | 0 |
| Q9SYS3 | Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana OX=3702 GN=CRK40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A398A669 | Protein kinase domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_C02730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |