Basic Information
Locus ID:
BniB08g037110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 22057678 | 22058322 | - | BniB08g037110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 19,587.34 Da | 55.30 | 93.39 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 119 | 168 | 5.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 170 | 1.44E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 171 | 9.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 167 | 4.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 168 | 11.899158 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018475299.1 | PREDICTED: uncharacterized protein LOC108846576 [Raphanus sativus] | 0 |
| TrEMBL | A0A8X7WL42 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002656 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT4G05350.1, AT4G12140.1, AT4G12150.1, AT4G12190.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10029142m.g.v1.0, Thhalv10029147m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06770.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g058300.2N, BniB08g037110.2N, BniB08g051300.2N ... |