halophFGD

Basic Information

Locus ID: BniB08g036490.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	21545289	21545768	+	BniB08g036490.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.78	18,377.85 Da	42.06	83.96	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13639	Ring finger domain	83	128	2.1E-10	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	71	135	1.3E-17	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	64	134	5.0E-17	IPR013083
SMART	SM00184	ring_2	84	127	2.7E-5	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	84	128	12.813844	IPR001841

KEGG Pathway

KO Term:

K12392 (AP-1 complex subunit beta-1)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G11360.1	RING-H2 finger A1B. Encodes a putative RING-H2 finger protein RHA1b.
RefSeq	XP_009134236.1	E3 ubiquitin-protein ligase RHA1B [Brassica rapa]
Swiss-Prot	Q9SUS5	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1
TrEMBL	A0A8X8BE52	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002702 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg2118, jg23489, jg37087, jg37414, jg4784, jg7642
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12851, gene_14720, gene_17762, gene_23601
Amaranthaceae	Atriplex hortensis	4	Ah004592, Ah004594, Ah004595, Ah022968
Amaranthaceae	Beta vulgaris	2	BVRB_1g004250, BVRB_5g100240
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg23905, Sbi_jg23909, Sbi_jg4545, Sbi_jg49441 ... Sbi_jg7730, Sbi_jg7734
Amaranthaceae	Salicornia europaea	4	Seu_jg12291, Seu_jg12293, Seu_jg20492, Seu_jg5952
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000478, GOSA_00001158
Amaranthaceae	Suaeda glauca	6	Sgl11040, Sgl16449, Sgl52075, Sgl52085, Sgl57343, Sgl57344
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006133, gene:ENSEOMG00000006501 ... gene:ENSEOMG00000013652, gene:ENSEOMG00000017301, gene:ENSEOMG00000021377, gene:ENSEOMG00000022801, gene:ENSEOMG00000024225, gene:ENSEOMG00000024743, gene:ENSEOMG00000049728
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0003180, CQ.Regalona.r1.2BG0025180 ... CQ.Regalona.r1.5AG0007060, CQ.Regalona.r1.5AG0007070, CQ.Regalona.r1.5BG0007340, CQ.Regalona.r1.5BG0007350
Anacardiaceae	Pistacia vera	4	pistato.v30004780, pistato.v30133090, pistato.v30135660 ... pistato.v30136500
Apiaceae	Apium graveolens	5	Ag3G01275, Ag3G01277, Ag6G00700, Ag9G02783, Ag9G02784
Arecaceae	Cocos nucifera	6	COCNU_07G007710, COCNU_08G007870, COCNU_08G007920 ... COCNU_09G003310, COCNU_09G003400, COCNU_10G006190
Arecaceae	Phoenix dactylifera	7	gene-LOC103696090, gene-LOC103706415, gene-LOC103710733 ... gene-LOC103712215, gene-LOC113463074, gene-LOC120107066, gene-LOC120109894
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2351.V1.1, AsparagusV1_04.2532.V1.1
Asteraceae	Flaveria trinervia	10	Ftri13G09685, Ftri14G02319, Ftri14G15719, Ftri16G31121 ... Ftri17G09135, Ftri18G00393, Ftri2G24374, Ftri3G32053, Ftri7G10173, Ftri7G25718
Brassicaceae	Arabidopsis thaliana	6	AT1G63840.1, AT3G61460.1, AT4G00305.1, AT4G11360.1 ... AT4G11370.1, AT5G41400.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006258m.g.v1.0, Thhalv10023722m.g.v1.0 ... Thhalv10027962m.g.v1.0, Thhalv10029035m.g.v1.0, Thhalv10029432m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp2g00850.v2.2, Sp5g01940.v2.2, Sp6g00370.v2.2 ... Sp6g06090.v2.2, Sp7g00550.v2.2, SpUn0010_0020.v2.2
Brassicaceae	Brassica nigra	9	BniB01g013930.2N, BniB04g022330.2N, BniB04g023820.2N ... BniB06g053190.2N, BniB06g061980.2N, BniB08g036490.2N, BniB08g041840.2N, BniB08g050330.2N, BniB08g075580.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0963, Ceq03G0337
Casuarinaceae	Casuarina glauca	5	Cgl02G0994, Cgl03G0411, Cgl03G0431, Cgl09G1820, Cgl09G1821
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno14g04400, gene.Cymno15g04100, gene.Cymno18g03510
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g24310, gene.Thate02g04440, gene.Thate05g15740 ... gene.Thate07g10010, gene.Thate08g18470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-12616, nbisL1-mrna-6139, nbisL1-mrna-9559
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.837, evm.TU.LG10.1437
Plantaginaceae	Plantago ovata	3	Pov_00003082, Pov_00005250, Pov_00028332
Plumbaginaceae	Limonium bicolor	1	Lb2G09300
Poaceae	Echinochloa crus-galli	15	AH06.57, AH07.3006, AH07.3010, AH08.366, AH09.2028, BH06.52 ... AH09.2040, BH07.2836, BH08.369, BH09.2188, BH09.2197, CH07.2911, CH07.2919, CH08.438, CH09.2346
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_2AG0140970, gene-QOZ80_2AG0141030 ... gene-QOZ80_2BG0196590, gene-QOZ80_2BG0196640, gene-QOZ80_4AG0306440, gene-QOZ80_4AG0306540, gene-QOZ80_4BG0337450, gene-QOZ80_4BG0337540, gene-QOZ80_6AG0505970, gene-QOZ80_6BG0458030, gene-QOZ80_8AG0617980, gene-QOZ80_8BG0645490
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0186200.1.CDS1 ... HORVU.MOREX.r3.2HG0186310.1.CDS1, HORVU.MOREX.r3.5HG0485560.1.CDS1, HORVU.MOREX.r3.6HG0604310.1.CDS1, HORVU.MOREX.r3.6HG0604390.1.CDS1, HORVU.MOREX.r3.7HG0637150.1.CDS1, HORVU.MOREX.r3.7HG0637240.1.CDS1, HORVU.MOREX.r3.7HG0699290.1.CDS1
Poaceae	Lolium multiflorum	9	gene-QYE76_024424, gene-QYE76_024428, gene-QYE76_024431 ... gene-QYE76_024437, gene-QYE76_032636, gene-QYE76_045733, gene-QYE76_045748, gene-QYE76_045777, gene-QYE76_064128
Poaceae	Oryza coarctata	6	Oco03G018250, Oco04G019000, Oco07G013880, Oco08G013390 ... Oco08G013440, Oco13G005630
Poaceae	Oryza sativa	6	LOC_Os02g45710.1, LOC_Os02g45780.1, LOC_Os04g49000.1 ... LOC_Os04g49160.1, LOC_Os07g23970.1, LOC_Os08g06090.1
Poaceae	Paspalum vaginatum	6	gene-BS78_04G237900, gene-BS78_04G238500 ... gene-BS78_06G196500, gene-BS78_06G197300, gene-BS78_07G050100, gene-BS78_10G006300
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0703591, Pt_Chr0703596, Pt_Chr0703606
Poaceae	Sporobolus alterniflorus	19	Chr06G005030, Chr06G005060, Chr09G023390, Chr09G023450 ... Chr10G000660, Chr11G024610, Chr15G006560, Chr15G006600, Chr16G001450, Chr17G001380, Chr20G011260, Chr23G005790, Chr23G005900, Chr25G004880, Chr25G004930, Chr26G013710, Chr26G013790, Chr29G011340, Chr30G004690
Poaceae	Thinopyrum elongatum	10	Tel2E01G678000, Tel2E01G679100, Tel6E01G481300 ... Tel6E01G481900, Tel6E01G737100, Tel6E01G737800, Tel6E01G738000, Tel7E01G051300, Tel7E01G052100, Tel7E01G530400
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG057120, gene_TRIDC2AG057190 ... gene_TRIDC2BG060060, gene_TRIDC2BG060110, gene_TRIDC4AG068320, gene_TRIDC4AG068330, gene_TRIDC4AG068340, gene_TRIDC4AG068400, gene_TRIDC4AG068740, gene_TRIDC6AG039870, gene_TRIDC6AG039920, gene_TRIDC6BG046760, gene_TRIDC6BG046800, gene_TRIDC7AG002290, gene_TRIDC7AG041870, gene_TRIDC7BG030870
Poaceae	Triticum aestivum	27	TraesCS2A02G395100.1.cds1, TraesCS2A02G395500.1.cds1 ... TraesCS2B02G413200.1.cds1, TraesCS2B02G413800.1.cds1, TraesCS2D02G392500.1.cds1, TraesCS2D02G393400.1.cds1, TraesCS4A02G463800.1.cds1, TraesCS4A02G463900.1.cds1, TraesCS4A02G464300.1.cds1, TraesCS4A02G465400.1.cds1, TraesCS4A02G468600.1, TraesCS6A02G258800.1.cds1, TraesCS6A02G259200.1.cds1, TraesCS6B02G266600.1.cds1, TraesCS6B02G286500.1.cds1, TraesCS6D02G240000.1.cds1, TraesCS6D02G240300.1.cds1, TraesCS7A02G024600.1.cds1, TraesCS7A02G025100.1.cds1, TraesCS7A02G025200.1.cds1, TraesCS7A02G300000.1.cds1, TraesCS7B02G188200.1.cds1, TraesCS7D02G022600.1.cds1, TraesCS7D02G023000.1.cds1, TraesCS7D02G023100.1.cds1, TraesCS7D02G043400.1.cds1, TraesCS7D02G295800.1.cds1
Poaceae	Zea mays	10	Zm00001eb073090_P001, Zm00001eb092250_P001 ... Zm00001eb172520_P001, Zm00001eb187290_P001, Zm00001eb187340_P001, Zm00001eb250730_P001, Zm00001eb269600_P001, Zm00001eb379190_P001, Zm00001eb427950_P001, Zm00001eb428450_P001
Poaceae	Zoysia japonica	9	nbis-gene-22250, nbis-gene-22636, nbis-gene-22646 ... nbis-gene-39065, nbis-gene-40217, nbis-gene-41615, nbis-gene-5631, nbis-gene-5639, nbis-gene-9142
Poaceae	Zoysia macrostachya	10	Zma_g14136, Zma_g16883, Zma_g16887, Zma_g20290, Zma_g20295 ... Zma_g21833, Zma_g21838, Zma_g22495, Zma_g23635, Zma_g28975
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.3351, evm.TU.LG24.946, evm.TU.LG26.475
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g18580, gene.Posoc06g12090, gene.Posoc07g05570
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.60447.7, evm.TU.60448.7, evm.TU.Scaffold_14_RagTag.19 ... evm.TU.Scaffold_16_RagTag.156, evm.TU.Scaffold_5_RagTag.239
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18232, nbisL1-mrna-18393, nbisL1-mrna-22395 ... nbisL1-mrna-67
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10301, nbisL1-mrna-11099, nbisL1-mrna-15228 ... nbisL1-mrna-4202
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-8551
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000006l.62, add.evm.TU.utg000007l.157 ... add.evm.TU.utg000007l.191, add.evm.TU.utg000022l.223
Rhizophoraceae	Kandelia obovata	2	Maker00013310, Maker00018623
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-18164, nbisL1-mrna-20399, nbisL1-mrna-23212 ... nbisL1-mrna-23334
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10523, nbisL1-mrna-24484, nbisL1-mrna-6702 ... nbisL1-mrna-7055
Salicaceae	Populus euphratica	9	populus_peu00210, populus_peu03591, populus_peu08386 ... populus_peu17242, populus_peu27664, populus_peu31641, populus_peu34437, populus_peu36958, populus_peu37308
Solanaceae	Lycium barbarum	3	gene-LOC132609907, gene-LOC132614126, gene-LOC132634874
Solanaceae	Solanum chilense	2	SOLCI003703300, SOLCI004413400
Solanaceae	Solanum pennellii	3	gene-LOC107011349, gene-LOC107027944, gene-LOC107028050
Tamaricaceae	Reaumuria soongarica	2	STRG.10684_chr07_+, STRG.22805_chr05_+
Zosteraceae	Zostera marina	5	Zosma01g31440.v3.1, Zosma02g15130.v3.1, Zosma02g15150.v3.1 ... Zosma05g10000.v3.1, Zosma06g10580.v3.1