halophFGD

Basic Information

Locus ID: BniB08g035540.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	20692241	20692516	-	BniB08g035540.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.60	8,386.76 Da	23.80	94.93	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	7	70	6.78E-6	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	6	75	4.5E-10	-
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	33	55	-	IPR017441

Gene Ontology

Molecular Function:

GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13436 (pto-interacting protein 1 [EC:2.7.11.1])

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G17410.1	Protein kinase superfamily protein.
RefSeq	XP_013621846.1	PREDICTED: pto-interacting protein 1-like [Brassica oleracea var. oleracea]
Swiss-Prot	Q9LUT0	Receptor-like cytoplasmic kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CARK1 PE=1 SV=1
TrEMBL	A0A8X8B0U6	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020844 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	2	AsparagusV1_08.2985.V1.1, AsparagusV1_08.2986.V1.1
Brassicaceae	Brassica nigra	1	BniB08g035540.2N
Poaceae	Zoysia japonica	1	nbis-gene-50151
Tamaricaceae	Tamarix chinensis	4	TC02G1743, TC05G0361, TC05G0510, TC12G1251