Basic Information
Locus ID:
BniB08g035420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 20597422 | 20599059 | - | BniB08g035420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 47,892.47 Da | 62.14 | 87.86 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 17 | 164 | 7.52725E-51 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 232 | 275 | 3.99552E-23 | - |
| Pfam | PF13639 | Ring finger domain | 232 | 275 | 7.2E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 83 | 143 | 2.4E-8 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 229 | 280 | 7.07E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 82 | 160 | 7.32E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 280 | 3.2E-18 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 24 | 156 | 1.8E-23 | - |
| SMART | SM00184 | ring_2 | 233 | 274 | 3.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 275 | 12.061441 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09560.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_018473276.1 | PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 4-like [Raphanus sativus] | 0 |
| Q0WPW5 | Receptor homology region, transmembrane domain- and RING domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=RMR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WLI1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002787 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology