Basic Information
Locus ID:
BniB08g035060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 20311821 | 20315060 | - | BniB08g035060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 82,242.47 Da | 37.83 | 90.56 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 352 | 653 | 5.52837E-174 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 335 | 1.68176E-176 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 358 | 647 | 9.5E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 352 | 654 | 2.88E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 333 | 2.38E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 35 | 336 | 7.1E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 352 | 654 | 8.9E-43 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 352 | 654 | 44.284653 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 336 | 43.537605 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 730 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_018452060.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Raphanus sativus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8X7WLF4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology