Basic Information
Locus ID:
BniB08g034450.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 19816868 | 19819307 | - | BniB08g034450.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 72,236.17 Da | 48.34 | 92.65 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 350 | 606 | 1.38041E-97 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 153 | 241 | 1.6E-8 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 346 | 603 | 3.1E-48 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 31 | 125 | 2.1E-10 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 330 | 630 | 2.43E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 25 | 128 | 1.7E-13 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 148 | 245 | 4.5E-17 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 419 | 615 | 6.1E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 306 | 418 | 3.9E-33 | - |
| SMART | SM00220 | serkin_6 | 344 | 609 | 5.1E-40 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 138 | 245 | 15.02241 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 19 | 128 | 14.524545 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 344 | 614 | 39.763901 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 350 | 372 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 464 | 476 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 39. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_009114347.2 | putative cysteine-rich receptor-like protein kinase 39 isoform X2 [Brassica rapa] | 0 |
| Q9SYS7 | Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana OX=3702 GN=CRK39 PE=3 SV=1 | 0 | |
| TrEMBL | M4DM21 | Protein kinase domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |