Basic Information
Locus ID:
BniB08g032840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 18246327 | 18250177 | - | BniB08g032840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 84,353.52 Da | 35.15 | 86.00 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 199 | 224 | 3.0E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 543 | 576 | 9.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 395 | 724 | 9.39E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 727 | 3.9E-28 | IPR015943 |
| SMART | SM00667 | Lish | 12 | 44 | 0.01 | IPR006594 |
| SMART | SM00668 | ctlh | 42 | 100 | 5.5 | IPR006595 |
| SMART | SM00668 | ctlh | 226 | 284 | 1.7E-4 | IPR006595 |
| SMART | SM00667 | Lish | 196 | 228 | 3.7E-6 | IPR006594 |
| SMART | SM00320 | WD40_4 | 385 | 423 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 576 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 671 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 226 | 284 | 9.742054 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 544 | 579 | 10.07378 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 12 | 44 | 9.075322 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 196 | 228 | 10.720249 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 544 | 585 | 12.145943 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25420.4 | - | 0 |
| RefSeq | XP_018459756.1 | PREDICTED: topless-related protein 4 isoform X1 [Raphanus sativus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7WLD4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003006 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G25420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000070m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g04630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g032840.2N |