Basic Information
Locus ID:
BniB08g032180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 17522190 | 17523125 | - | BniB08g032180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 35,747.19 Da | 47.99 | 72.11 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 230 | 312 | 7.1E-24 | IPR013187 |
| Pfam | PF00646 | F-box domain | 31 | 63 | 9.7E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 97 | 2.22E-10 | IPR036047 |
| SMART | SM00256 | fbox_2 | 32 | 71 | 1.9E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 131 | 312 | 6.1E-40 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32420.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013624028.1 | PREDICTED: putative F-box protein At5g50220 [Brassica oleracea var. oleracea] | 0 |
| Q9LQL5 | Putative F-box protein At1g32420 OS=Arabidopsis thaliana OX=3702 GN=At1g32420 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7WLZ7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003057 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G52490.1, AT3G56670.1, AT5G50220.1, AT5G62060.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10002240m.g.v1.0, Thhalv10005381m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03180.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g016620.2N, BniB01g016630.2N, BniB01g027720.2N ... |