Basic Information
Locus ID:
BniB08g030660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 16286425 | 16288995 | + | BniB08g030660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 59,047.70 Da | 64.90 | 51.05 | -1.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 419 | 449 | 9.0E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 318 | 400 | 2.9E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 318 | 403 | 1.5E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 177 | - | - |
| Coils | Coil | Coil | 307 | 344 | - | - |
| Coils | Coil | Coil | 360 | 380 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_018461796.1 | PREDICTED: uncharacterized protein LOC108832843 [Raphanus sativus] | 0 |
| TrEMBL | A0A8X7WLN2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology