Basic Information
Locus ID:
BniB08g030130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
SPA1
Description:
suppressor of phya-105
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 15889624 | 15892529 | - | BniB08g030130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 52,660.08 Da | 48.70 | 73.73 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 290 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 370 | 0.028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 170 | 388 | 9.03E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 141 | 445 | 2.1E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 295 | 328 | 71.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 9.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 198 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 370 | 4.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 249 | 72.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 339 | 372 | 9.757418 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 339 | 372 | 11.678087 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 357 | 371 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46340.1 | SPA (suppressor of phyA-105) protein family. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. | 0 |
| RefSeq | XP_048631817.1 | protein SUPPRESSOR OF PHYA-105 1-like isoform X1 [Brassica napus] | 0 |
| Q9SYX2 | Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9M7M8 | Protein kinase domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q70_00008884 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology