Basic Information
Locus ID:
BniB08g029970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBC6
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 15811997 | 15813009 | - | BniB08g029970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 17,926.21 Da | 42.69 | 73.99 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 142 | 2.16986E-49 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 11 | 140 | 6.3E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 142 | 4.82E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 4 | 152 | 3.0E-45 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 3.7E-47 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 37.770531 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46030.1 | ubiquitin-conjugating enzyme 6. Ubiquitin conjugating enzyme E2 | 0 |
| RefSeq | XP_018475754.1 | PREDICTED: ubiquitin-conjugating enzyme E2 6-like [Raphanus sativus] | 0 |
| P42750 | Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 SV=2 | 0 | |
| TrEMBL | R0HEF9 | UBC core domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v10024128mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology