Basic Information
Locus ID:
BniB08g029500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 15532544 | 15544135 | - | BniB08g029500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 43,579.29 Da | 52.75 | 94.88 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 203 | 275 | 1.67666E-40 | IPR033896 |
| CDD | cd00265 | MADS_MEF2_like | 3 | 75 | 1.95206E-38 | IPR033896 |
| Pfam | PF01486 | K-box region | 289 | 370 | 2.9E-20 | IPR002487 |
| Pfam | PF01486 | K-box region | 91 | 170 | 1.8E-20 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 5.1E-25 | IPR002100 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 210 | 257 | 7.6E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 203 | 274 | 1.83E-31 | IPR036879 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 1.57E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 213 | 276 | 1.3E-27 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 78 | 4.9E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 201 | 260 | 1.6E-40 | IPR002100 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.3E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 286 | 373 | 13.607407 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.062111 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 201 | 261 | 31.482645 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 179 | 13.381211 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 223 | 238 | 7.4E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 203 | 223 | 7.4E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 238 | 259 | 7.4E-29 | IPR002100 |
| Coils | Coil | Coil | 323 | 369 | - | - |
| Coils | Coil | Coil | 125 | 174 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51870.4 | - | 0 |
| RefSeq | XP_009132581.1 | MADS-box protein AGL71-like [Brassica rapa] | 0 |
| Q9LT93 | MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397ZUY7 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA03T10890Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology