Basic Information
Locus ID:
BniB08g028810.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
kelch repeat-containing F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 15180003 | 15181211 | + | BniB08g028810.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 44,619.10 Da | 58.07 | 70.72 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 57 | 5.0E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 138 | 182 | 1.1E-6 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 192 | 231 | 9.1E-10 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 64 | 1.03E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 114 | 388 | 9.55E-36 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 72 | 1.6E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 87 | 337 | 1.4E-31 | IPR015915 |
| SMART | SM00612 | kelc_smart | 198 | 245 | 1.7E-7 | IPR006652 |
| SMART | SM00256 | fbox_2 | 21 | 61 | 1.1E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 148 | 196 | 0.0017 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_009133659.1 | F-box/kelch-repeat protein At2g44130 [Brassica rapa] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7WLU1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003329 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology