Basic Information
Locus ID:
BniB08g028680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Inositol polyphosphate phosphatase, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 15130476 | 15135220 | - | BniB08g028680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 140,313.38 Da | 45.37 | 68.62 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09074 | INPP5c | 585 | 932 | 8.09861E-110 | - |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 590 | 923 | 2.7E-16 | IPR005135 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 174 | 563 | 3.01E-24 | - |
| SUPERFAMILY | SSF56219 | DNase I-like | 562 | 955 | 9.21E-58 | IPR036691 |
| Gene3D | G3DSA:2.130.10.10 | - | 342 | 564 | 2.4E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 341 | 1.6E-6 | IPR015943 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 565 | 963 | 1.3E-100 | IPR036691 |
| SMART | SM00320 | WD40_4 | 481 | 518 | 9.0 | IPR001680 |
| SMART | SM00128 | i5p_5 | 583 | 938 | 6.7E-94 | IPR000300 |
| SMART | SM00320 | WD40_4 | 266 | 304 | 0.081 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 248 | 7.9 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1224 | 1270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1128 | 1223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1270 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43900.1 | Endonuclease/exonuclease/phosphatase family protein. | 0 |
| RefSeq | XP_018476320.1 | PREDICTED: type I inositol polyphosphate 5-phosphatase 12 isoform X2 [Raphanus sativus] | 0 |
| O80560 | Type I inositol polyphosphate 5-phosphatase 12 OS=Arabidopsis thaliana OX=3702 GN=IP5P12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0MV48 | type I inositol polyphosphate 5-phosphatase 12 isoform X2 OS=Raphanus sativus OX=3726 GN=LOC108847552 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology