Basic Information
Locus ID:
BniB08g028550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
defense response to oomycetes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 15058817 | 15060787 | + | BniB08g028550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 72,780.34 Da | 38.83 | 89.89 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 16 | 230 | 2.27675E-62 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 37 | 230 | 1.0E-44 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 319 | 524 | 2.5E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 300 | 593 | 1.31E-76 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 16 | 98 | 1.15E-7 | IPR013320 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 107 | 341 | 5.18E-53 | IPR013320 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 396 | 607 | 1.1E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 304 | 395 | 9.3E-32 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 13 | 242 | 3.6E-44 | - |
| SMART | SM00220 | serkin_6 | 319 | 577 | 1.6E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 319 | 577 | 38.308098 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 325 | 348 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 441 | 453 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43700.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_022573287.2 | L-type lectin-domain containing receptor kinase V.4-like isoform X1 [Brassica napus] | 0 |
| O22833 | L-type lectin-domain containing receptor kinase V.4 OS=Arabidopsis thaliana OX=3702 GN=LECRK54 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8BFR8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43690.1, AT2G43700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001352m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB01g002460.2N, BniB01g002480.2N, BniB08g028550.2N |