Basic Information
Locus ID:
BniB08g028330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
LicD family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 14904592 | 14906340 | - | BniB08g028330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 53,054.84 Da | 46.51 | 82.54 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 207 | 316 | 5.4E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 9 | 43 | 2.7E-6 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 71 | 340 | 8.63E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 78 | 8.63E-10 | IPR036047 |
| SMART | SM00256 | fbox_2 | 9 | 48 | 0.0038 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 320 | 3.6E-22 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43260.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006411150.2 | F-box/LRR-repeat protein At2g43260 [Eutrema salsugineum] | 0 |
| Q8S8Q9 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WL20 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G49790.2, AT2G30615.1, AT2G42955.1, AT2G43260.1 ... |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10001524m.g.v1.0, Thhalv10005447m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g31660.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g002760.2N, BniB01g011350.2N, BniB02g072460.2N ... |