Basic Information
Locus ID:
BniB08g026730.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 13947277 | 13949184 | + | BniB08g026730.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 49,252.16 Da | 55.45 | 83.69 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 255 | 386 | 7.7E-33 | IPR013187 |
| Pfam | PF00646 | F-box domain | 50 | 87 | 1.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 46 | 103 | 2.22E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 87 | 3.5E-6 | - |
| SMART | SM00256 | fbox_2 | 51 | 91 | 1.6E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 147 | 394 | 1.0E-41 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 45 | 95 | 9.417986 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40920.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013628821.1 | PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein At2g40920-like [Brassica oleracea var. oleracea] | 0 |
| Q2V414 | F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana OX=3702 GN=At2g40920 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3P6AQP4 | F-box domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC3T15121H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |