Basic Information
Locus ID:
BniB08g026660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 13890567 | 13892146 | - | BniB08g026660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 56,040.48 Da | 58.52 | 89.73 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 305 | 437 | 1.6E-32 | IPR013187 |
| Pfam | PF00646 | F-box domain | 98 | 137 | 2.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 94 | 155 | 1.57E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 81 | 137 | 1.5E-6 | - |
| SMART | SM00256 | fbox_2 | 101 | 141 | 3.7E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 198 | 445 | 5.9E-41 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 95 | 145 | 10.186324 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40910.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018436997.1 | PREDICTED: F-box protein At2g40910-like [Raphanus sativus] | 0 |
| Q3EBI7 | F-box protein At2g40910 OS=Arabidopsis thaliana OX=3702 GN=At2g40910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0JMV3 | F-box protein At2g40910-like OS=Raphanus sativus OX=3726 GN=LOC108809348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |