Basic Information
Locus ID:
BniB08g026610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is F-box and associated interaction domains-containing protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 13877919 | 13879209 | + | BniB08g026610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 34,320.97 Da | 44.90 | 86.22 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 173 | 291 | 4.6E-26 | IPR013187 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 286 | 1.1E-18 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40920.2 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013628820.1 | PREDICTED: F-box/LRR-repeat protein At2g40920-like [Brassica oleracea var. oleracea] | 0 |
| Q2V414 | F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana OX=3702 GN=At2g40920 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D3B660 | F-box domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106334957 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |