halophFGD

Basic Information

Locus ID: BniB08g026550.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: BEST Arabidopsis thaliana protein match is F-box and associated interaction domains-containing protein (TAIR

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	13832066	13832833	+	BniB08g026550.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.68	28,685.99 Da	39.49	96.23	0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	151	252	7.8E-23	IPR013187
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	44	251	3.4E-36	IPR017451

Best hit

Source	Best Hit ID	Description
TAIR	AT2G40920.2	F-box and associated interaction domains-containing protein.
RefSeq	XP_013647858.2	F-box protein At2g40910 [Brassica napus]
Swiss-Prot	Q2V414	F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana OX=3702 GN=At2g40920 PE=2 SV=2
TrEMBL	A0A8X7WM88	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003501 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	11	AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... AT3G52320.1, AT3G52330.1, AT3G52510.1, AT4G19930.1, AT4G19940.1, AT5G62510.1, AT5G62660.1
Brassicaceae	Eutrema salsugineum	16	Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... Thhalv10005397m.g.v1.0, Thhalv10005666m.g.v1.0, Thhalv10008003m.g.v1.0, Thhalv10009896m.g.v1.0, Thhalv10011525m.g.v1.0, Thhalv10012025m.g.v1.0, Thhalv10016561m.g.v1.0, Thhalv10019615m.g.v1.0, Thhalv10019649m.g.v1.0, Thhalv10023110m.g.v1.0, Thhalv10025237m.g.v1.0, Thhalv10028181m.g.v1.0, Thhalv10029357m.g.v1.0, Thhalv10029429m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2
Brassicaceae	Brassica nigra	35	BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... BniB02g071200.2N, BniB02g071210.2N, BniB02g088710.2N, BniB03g004100.2N, BniB03g004340.2N, BniB03g022920.2N, BniB03g022950.2N, BniB03g051110.2N, BniB03g051150.2N, BniB04g005130.2N, BniB04g046980.2N, BniB04p000224.2N, BniB05g010060.2N, BniB07g000640.2N, BniB07g043030.2N, BniB07g054790.2N, BniB07g061700.2N, BniB08g002270.2N, BniB08g026550.2N, BniB08g026610.2N, BniB08g026650.2N, BniB08g026660.2N, BniB08g026700.2N, BniB08g026730.2N, BniB08g066390.2N, BniB08g066550.2N, BniB08g066650.2N, BniB08g066670.2N, BniB08g066690.2N, BniB08g071850.2N, BniB08g072900.2N, BniB08g072960.2N