halophFGD

Basic Information

Locus ID: BniB08g026110.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Glycosyl transferase family 2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	13570666	13572036	-	BniB08g026110.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.95	48,300.22 Da	42.09	84.77	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	8	40	2.0E-4	IPR001810
Pfam	PF07734	F-box associated	219	343	8.9E-6	IPR006527
SUPERFAMILY	SSF81383	F-box domain	3	45	6.02E-8	IPR036047
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	123	314	1.44E-6	IPR011043
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	111	312	8.1E-19	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K00729 (dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117])

Pathway:

ko00510 (N-Glycan biosynthesis) map00510 (N-Glycan biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00055 (N-glycan precursor biosynthesis)

Reaction:

R01005 (UDP-glucose + Dolichyl phosphate <=> UDP + Dolichyl beta-D-glucosyl phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G49790.1	F-box associated ubiquitination effector family protein.
RefSeq	XP_013683619.1	F-box/kelch-repeat protein At2g43445 [Brassica napus]
Swiss-Prot	Q8S8Q9	F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1
TrEMBL	A0A8X8BBJ4	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003544 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	8	AT1G49790.2, AT2G30615.1, AT2G42955.1, AT2G43260.1 ... AT2G43270.1, AT2G43440.1, AT2G43445.1, AT4G17780.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10001524m.g.v1.0, Thhalv10005447m.g.v1.0 ... Thhalv10006490m.g.v1.0, Thhalv10016716m.g.v1.0, Thhalv10016886m.g.v1.0, Thhalv10027104m.g.v1.0, Thhalv10027244m.g.v1.0, Thhalv10029368m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g31660.v2.2
Brassicaceae	Brassica nigra	11	BniB01g002760.2N, BniB01g011350.2N, BniB02g072460.2N ... BniB03g031660.2N, BniB03g031740.2N, BniB03g031800.2N, BniB06g002100.2N, BniB06g002150.2N, BniB06g016790.2N, BniB08g026110.2N, BniB08g028330.2N