Basic Information
Locus ID:
BniB08g025520.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 13150630 | 13151784 | - | BniB08g025520.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 41,342.24 Da | 83.45 | 54.12 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 192 | 233 | 7.09691E-22 | - |
| Pfam | PF13639 | Ring finger domain | 191 | 233 | 2.9E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 257 | 375 | 4.6E-31 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 6 | 35 | 3.2E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 239 | 5.65E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 239 | 8.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 9.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 12.090947 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 327 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_013622069.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Brassica oleracea var. oleracea] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P5ZI27 | RING-type E3 ubiquitin transferase OS=Brassica campestris OX=3711 GN=BRAA03T11454Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology