Basic Information
Locus ID:
BniB08g025170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Serine threonine-protein kinase-like protein CCR2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 12913319 | 12915619 | - | BniB08g025170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 83,702.91 Da | 34.25 | 80.80 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 172 | 198 | 3.6E-5 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 247 | 273 | 1.4E-5 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 513 | 667 | 1.6E-35 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 487 | 756 | 3.1E-65 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 162 | 310 | 5.23E-15 | IPR009091 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 27 | 198 | 4.19E-11 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 166 | 308 | 4.4E-12 | IPR009091 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 587 | 763 | 3.9E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 485 | 586 | 3.7E-30 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 14 | 165 | 2.6E-9 | IPR009091 |
| SMART | SM00220 | serkin_6 | 509 | 756 | 2.0E-19 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 509 | 759 | 29.870102 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 630 | 642 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 515 | 537 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39180.1 | CRINKLY4 related 2. | 0 |
| RefSeq | XP_013623240.1 | PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Brassica oleracea var. oleracea] | 0 |
| O80963 | Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana OX=3702 GN=CCR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9P299 | Protein kinase domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00001932 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14951 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14248 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030362 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2059, Sbi_jg34457 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2712 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005787 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71216, Sgl74786 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000034139, gene:ENSEOMG00000042270 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016560, CQ.Regalona.r1.7BG0018310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30272450 |
| Apiaceae | Apium graveolens | 2 | Ag10G01950, Ag2G00698 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G02069 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G39180.1, AT3G09780.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016278m.g.v1.0, Thhalv10020117m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g08120.v2.2, Sp4g21510.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g055110.2N, BniB08g025170.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0626, Ceq08G1317 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0639, Cgl08G1343 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1956 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1421 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005113 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00821 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1690, evm.TU.LG10.1180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1564 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5269, nbisL1-mrna-5365 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21026 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3899 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.232 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017075 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17137, nbisL1-mrna-19849 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20663, nbisL1-mrna-332 |
| Salicaceae | Populus euphratica | 3 | populus_peu20118, populus_peu25746, populus_peu25759 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630062 |
| Solanaceae | Solanum chilense | 1 | SOLCI004669900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031805 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7566 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0698 |