Basic Information
Locus ID:
BniB08g024300.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 12399086 | 12406749 | + | BniB08g024300.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 148,843.09 Da | 36.59 | 84.79 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1033 | 1303 | 1.35802E-82 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 55 | 353 | 1.09233E-176 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 370 | 671 | 5.73226E-168 | - |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 845 | 942 | 9.5E-18 | IPR032872 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 725 | 788 | 2.1E-10 | IPR025287 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1029 | 1300 | 1.2E-45 | IPR001245 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 376 | 663 | 2.1E-21 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 370 | 671 | 5.23E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 54 | 351 | 1.1E-42 | IPR017946 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1007 | 1301 | 3.28E-70 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 999 | 1101 | 2.7E-27 | - |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 370 | 672 | 3.8E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 53 | 354 | 1.5E-37 | IPR017946 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1102 | 1310 | 8.7E-49 | - |
| SMART | SM00220 | serkin_6 | 1027 | 1301 | 3.1E-28 | IPR000719 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 370 | 672 | 44.04105 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 55 | 354 | 43.448284 | IPR030395 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1027 | 1316 | 37.841679 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1033 | 1055 | - | IPR017441 |
| ProSitePatterns | PS00022 | EGF-like domain signature 1. | 937 | 948 | - | IPR000742 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1146 | 1158 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66980.3 | - | 0 |
| RefSeq | XP_018472788.1 | PREDICTED: protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 [Raphanus sativus] | 0 |
| D7SFH9 | Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0MLJ7 | glycerophosphodiester phosphodiesterase OS=Raphanus sativus OX=3726 GN=LOC108844084 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology