Basic Information
Locus ID:
BniB08g023990.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 12103074 | 12104541 | - | BniB08g023990.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 47,356.81 Da | 45.05 | 77.07 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 321 | 1.9E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 149 | 214 | 4.4E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 369 | 403 | 0.0035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 273 | 4.7E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 122 | 403 | 4.76E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 406 | 4.4E-112 | IPR015943 |
| SMART | SM00320 | WD40_4 | 279 | 321 | 4.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 324 | 361 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 230 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 189 | 0.043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 145 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 403 | 2.1E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 241 | 273 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 282 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 330 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 157 | 198 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 371 | 404 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 371 | 404 | 12.513543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 390 | 404 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 308 | 322 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 430 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_048603347.1 | cell division cycle 20.2, cofactor of APC complex-like [Brassica napus] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WPE7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology