Basic Information
Locus ID:
BniB08g023860.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein ATL33-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 12010525 | 12011238 | + | BniB08g023860.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 25,420.33 Da | 71.52 | 72.41 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 142 | 185 | 5.67619E-19 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 185 | 2.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 191 | 1.38E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 191 | 1.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 143 | 184 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 185 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 237 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_033142445.1 | RING-H2 finger protein ATL33 [Brassica rapa] | 0 |
| O80927 | RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8BF21 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32562 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4462 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021345 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59552, Sbi_jg63108 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23793 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024334 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02926, Sgl08036 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016210, gene:ENSEOMG00000030269 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0018720, CQ.Regalona.r1.3BG0017590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30271110 |
| Apiaceae | Apium graveolens | 1 | Ag4G01557 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1892.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G37580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017177m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19930.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g007240.2N, BniB08g023860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1178 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5895 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1277, evm.TU.LG03.656 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2106, evm.TU.LG15.1026 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.762 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4423 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9892 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9473 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.426 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005800 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21883 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5956 |
| Salicaceae | Populus euphratica | 1 | populus_peu34959 |
| Solanaceae | Solanum chilense | 1 | SOLCI001845300 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.27472_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2601 |