Basic Information
Locus ID:
BniB08g022120.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 10944610 | 10949667 | + | BniB08g022120.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 139,825.47 Da | 49.10 | 71.70 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 990 | 1246 | 1.43911E-108 | - |
| CDD | cd06410 | PB1_UP2 | 189 | 283 | 2.28352E-44 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 985 | 1246 | 1.5E-60 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 201 | 283 | 1.2E-21 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 974 | 1245 | 6.79E-77 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 202 | 289 | 4.25E-21 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 977 | 1072 | 9.7E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1073 | 1264 | 2.2E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 204 | 285 | 3.5E-11 | - |
| SMART | SM00666 | PB1_new | 200 | 286 | 4.6E-32 | IPR000270 |
| SMART | SM00220 | serkin_6 | 984 | 1249 | 1.7E-57 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 984 | 1249 | 40.809818 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 990 | 1011 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1108 | 1120 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1173 | 1195 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1217 | 1239 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1066 | 1079 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1102 | 1120 | 2.7E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 561 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 597 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_009133009.1 | uncharacterized protein LOC103857556 [Brassica rapa] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816VMS9 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A03P19380.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology