Basic Information
Locus ID:
BniB08g021740.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
positive regulation of bicellular tight junction assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 10719270 | 10720839 | + | BniB08g021740.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 52,815.46 Da | 39.96 | 95.92 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 40 | 3.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 57 | 1.57E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 133 | 364 | 3.06E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 119 | 458 | 1.1E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 53 | 1.9E-6 | - |
| SMART | SM00579 | 9598neu4hmm | 399 | 463 | 4.6E-12 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 41 | 9.550458 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48400.2 | - | 0 |
| RefSeq | XP_018474093.1 | PREDICTED: F-box/LRR-repeat protein At1g48400-like [Raphanus sativus] | 0 |
| Q56XW8 | F-box/LRR-repeat protein At1g48400 OS=Arabidopsis thaliana OX=3702 GN=At1g48400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8BHN8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_006363 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G21990.1, AT1G47920.1, AT1G48390.1, AT1G48400.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012238m.g.v1.0, Thhalv10013291m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29200.v2.2 |
| Brassicaceae | Brassica nigra | 18 | BniB01g014250.2N, BniB02g013580.2N, BniB02g052700.2N ... |