Basic Information
Locus ID:
BniB08g021060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 10370429 | 10377162 | + | BniB08g021060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 115,344.94 Da | 40.37 | 90.72 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 630 | 692 | 3.4E-5 | IPR005174 |
| Pfam | PF00646 | F-box domain | 369 | 405 | 1.0E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 6 | 45 | 6.6E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 370 | 414 | 6.8E-6 | IPR036047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 66 | 571 | 1.1E-5 | IPR011044 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 64 | 6.54E-6 | IPR036047 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 493 | 903 | 9.22E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 369 | 407 | 9.6E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 45 | 8.3E-7 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 1.9E-5 | IPR001810 |
| SMART | SM00256 | fbox_2 | 373 | 414 | 3.2E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33200.1 | F-box family protein. | 0 |
| RefSeq | XP_013627877.1 | PREDICTED: putative F-box protein At4g22180 [Brassica oleracea var. oleracea] | 0 |
| O49315 | Putative F-box protein At2g33200 OS=Arabidopsis thaliana OX=3702 GN=At2g33200 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0D3B4N9 | F-box domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106334069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 36 | AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... |
| Brassicaceae | Brassica nigra | 32 | BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... |