Basic Information
Locus ID:
BniB08g020630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 10092925 | 10093570 | - | BniB08g020630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 20,252.26 Da | 46.84 | 91.56 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 34 | 174 | 7.52887E-39 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 36 | 173 | 3.1E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 34 | 178 | 3.11E-42 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 23 | 180 | 5.3E-44 | IPR016135 |
| SMART | SM00212 | ubc_7 | 35 | 179 | 1.1E-42 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 32 | 179 | 38.976936 | IPR000608 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32790.1 | Ubiquitin-conjugating enzyme family protein. | 0 |
| RefSeq | XP_018472668.1 | PREDICTED: SUMO-conjugating enzyme UBC9-like [Raphanus sativus] | 0 |
| Q1RMX2 | Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus OX=9913 GN=UBE2D2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7S3B4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_043363 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017672m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g15150.v2.2, Sp4g15160.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g020630.2N |