Basic Information
Locus ID:
BniB08g020560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 10058497 | 10062776 | + | BniB08g020560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 85,313.58 Da | 45.95 | 63.92 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 501 | 786 | 1.24872E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 512 | 537 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 669 | 703 | 3.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 752 | 786 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 551 | 579 | 2.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 587 | 623 | 0.0095 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 501 | 786 | 5.04E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 633 | 786 | 3.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 485 | 632 | 6.0E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 706 | 745 | 0.89 | IPR001680 |
| SMART | SM00320 | WD40_4 | 626 | 662 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 665 | 703 | 9.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 9.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 579 | 3.2E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 2.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 747 | 786 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 754 | 786 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 505 | 540 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 540 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 547 | 581 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 590 | 625 | 8.808332 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.821852 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 754 | 786 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 672 | 712 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 672 | 704 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 547 | 581 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 590 | 632 | 11.043142 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 524 | 538 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 566 | 580 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 773 | 786 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 566 | 580 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 524 | 538 | 5.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 407 | - | - |
| Coils | Coil | Coil | 79 | 106 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_013629164.1 | PREDICTED: transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Brassica oleracea var. oleracea] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BF87 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_003965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology