Basic Information
Locus ID:
BniB08g019640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 9505499 | 9506897 | + | BniB08g019640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 27,354.57 Da | 38.98 | 95.14 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 3.32632E-52 | - |
| Pfam | PF07650 | KH domain | 20 | 93 | 4.7E-13 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 106 | 188 | 8.9E-24 | IPR001351 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 1.99E-25 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 191 | 8.76E-27 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 4.5E-48 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 220 | 2.0E-63 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 210 | 2.0E-70 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.281033 | IPR004044 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53870.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_013628155.1 | PREDICTED: 40S ribosomal protein S3-2-like [Brassica oleracea var. oleracea] | 0 |
| Q9M339 | Small ribosomal subunit protein uS3y OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WPX0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology