Basic Information
Locus ID:
BniB08g019550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK24
Description:
ATP binding calcium ion binding calmodulin-dependent protein kinase kinase protein kinase protein serine threonine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 9464800 | 9467028 | + | BniB08g019550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 66,073.92 Da | 45.72 | 81.70 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 66 | 324 | 9.3785E-131 | - |
| CDD | cd00051 | EFh | 444 | 507 | 4.1363E-17 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 385 | 432 | 3.3E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 443 | 507 | 9.8E-12 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 67 | 325 | 1.8E-77 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 354 | 519 | 5.81E-40 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 66 | 326 | 8.9E-86 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 153 | 333 | 1.4E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 69 | 152 | 4.0E-28 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 334 | 510 | 7.1E-47 | - |
| SMART | SM00054 | efh_1 | 481 | 509 | 1.1E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 444 | 472 | 3.2E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 67 | 325 | 7.8E-102 | IPR000719 |
| SMART | SM00054 | efh_1 | 372 | 400 | 2.7E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 408 | 436 | 0.062 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 440 | 475 | 13.871811 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 67 | 325 | 49.742504 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 477 | 512 | 13.509171 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 404 | 439 | 8.571685 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 368 | 403 | 14.206556 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 381 | 393 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 490 | 502 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 73 | 96 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 187 | 199 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 453 | 465 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 417 | 429 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_018476244.1 | PREDICTED: calcium-dependent protein kinase 24 isoform X1 [Raphanus sativus] | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8BGC4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004042 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology