halophFGD

Basic Information

Locus ID: BniB08g018650.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box Kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	8919981	8921081	+	BniB08g018650.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.17	42,659.54 Da	49.66	87.81	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	14	55	1.1E-8	IPR001810
SUPERFAMILY	SSF81383	F-box domain	9	58	5.23E-9	IPR036047
SUPERFAMILY	SSF117281	Kelch motif	64	349	1.57E-27	IPR015915
Gene3D	G3DSA:1.20.1280.50	-	12	56	2.2E-5	-
Gene3D	G3DSA:2.120.10.80	-	57	335	4.1E-17	IPR015915
SMART	SM00256	fbox_2	17	57	2.5E-7	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	11	57	12.040932	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G38940.1	Galactose oxidase/kelch repeat superfamily protein.	0
RefSeq	XP_018475567.1	PREDICTED: F-box/kelch-repeat protein At4g38940-like [Raphanus sativus]	0
Swiss-Prot	Q9SVJ9	F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1	0
TrEMBL	A0A8X7WND5	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004131 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	31	Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... Thhalv10016904m.g.v1.0, Thhalv10016945m.g.v1.0, Thhalv10017512m.g.v1.0, Thhalv10017515m.g.v1.0, Thhalv10017533m.g.v1.0, Thhalv10017591m.g.v1.0, Thhalv10017616m.g.v1.0, Thhalv10017621m.g.v1.0, Thhalv10017648m.g.v1.0, Thhalv10017704m.g.v1.0, Thhalv10017708m.g.v1.0, Thhalv10017748m.g.v1.0, Thhalv10017764m.g.v1.0, Thhalv10017773m.g.v1.0, Thhalv10017778m.g.v1.0, Thhalv10017832m.g.v1.0, Thhalv10017911m.g.v1.0, Thhalv10017955m.g.v1.0, Thhalv10027506m.g.v1.0, Thhalv10029145m.g.v1.0, Thhalv10029154m.g.v1.0, Thhalv10029170m.g.v1.0, Thhalv10029266m.g.v1.0, Thhalv10029317m.g.v1.0, Thhalv10029396m.g.v1.0, Thhalv10029437m.g.v1.0, Thhalv10029470m.g.v1.0, Thhalv10029517m.g.v1.0, Thhalv10029520m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g12680.v2.2, Sp5g22490.v2.2
Brassicaceae	Brassica nigra	12	BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... BniB05g064040.2N, BniB05g064060.2N, BniB05g064070.2N, BniB06g019990.2N, BniB06g020020.2N, BniB08g016880.2N, BniB08g018650.2N, BniB08g018660.2N, BniB08g018680.2N