Basic Information
Locus ID:
BniB08g017740.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 8357508 | 8360692 | - | BniB08g017740.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.91 | 27,525.95 Da | 44.71 | 85.37 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 25 | 118 | 7.9E-27 | IPR027486 |
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 146 | 240 | 3.8E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 23 | 118 | 8.37E-29 | IPR036838 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 144 | 241 | 1.2E-29 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 8 | 121 | 3.6E-46 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 129 | 243 | 8.0E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 25 | 119 | 6.4E-38 | IPR027486 |
| SMART | SM01403 | Ribosomal_S10_2 | 146 | 240 | 3.7E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 22 | 119 | 9.6E-39 | IPR005729 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 143 | 241 | 3.1E-39 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 168 | 183 | - | IPR018268 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 47 | 62 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 80 | 94 | 3.0E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 23 | 36 | 3.0E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 58 | 73 | 3.0E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 142 | 241 | 18.399542 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 21 | 120 | 18.270929 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_018472542.1 | PREDICTED: 40S ribosomal protein S20-1-like [Raphanus sativus] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A8S2B2L8 | Genome assembly, chromosome: 8 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS22161 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology