Basic Information
Locus ID:
BniB08g017560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 8264162 | 8266476 | + | BniB08g017560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 47,438.00 Da | 27.38 | 75.51 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 181 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 341 | 0.0053 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 117 | 135 | 2.4E-7 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 128 | 430 | 8.55E-46 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 112 | 135 | 2.09E-6 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 123 | 287 | 2.1E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 288 | 437 | 6.1E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 346 | 389 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 258 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 302 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 429 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 181 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 342 | 1.9E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 54 | 0.036 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 113 | 137 | 2.0E-4 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 111 | 138 | 14.49264 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 149 | 181 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 311 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 55 | 10.042207 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 149 | 190 | 14.41838 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 7.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 289 | 303 | 7.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 168 | 182 | 7.1E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009132571.1 | zinc finger CCCH domain-containing protein 63 [Brassica rapa] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | M4EK32 | Zinc finger CCCH domain-containing protein 48-like OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology