Basic Information
Locus ID:
BniB08g017130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 8042622 | 8046863 | + | BniB08g017130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 92,182.68 Da | 51.62 | 84.47 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 546 | 679 | 2.35453E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 700 | 741 | 9.3E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 548 | 678 | 3.6E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 508 | 746 | 1.35E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 507 | 766 | 3.7E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 680 | 765 | 3.7E-94 | - |
| SMART | SM00382 | AAA_5 | 544 | 681 | 1.3E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 651 | 670 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 470 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_013630240.1 | PREDICTED: putative cell division cycle ATPase [Brassica oleracea var. oleracea] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7WML7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004226 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology