halophFGD

Basic Information

Locus ID: BniB08g016880.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	7885514	7886410	+	BniB08g016880.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.88	25,988.56 Da	69.45	101.21	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	16	59	2.5E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	14	56	4.71E-6	IPR036047
SMART	SM00256	fbox_2	20	60	0.0036	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	14	62	8.676143	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G02980.1	Galactose oxidase/kelch repeat superfamily protein.	0
RefSeq	XP_018474177.1	PREDICTED: F-box/kelch-repeat protein At5g03020-like [Raphanus sativus]	0
Swiss-Prot	Q9LYY7	Putative F-box/kelch-repeat protein At5g02980 OS=Arabidopsis thaliana OX=3702 GN=At5g02980 PE=4 SV=1	0
TrEMBL	A0A6J0MNW2	F-box/kelch-repeat protein At5g03020-like OS=Raphanus sativus OX=3726 GN=LOC108845468 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	31	Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... Thhalv10016904m.g.v1.0, Thhalv10016945m.g.v1.0, Thhalv10017512m.g.v1.0, Thhalv10017515m.g.v1.0, Thhalv10017533m.g.v1.0, Thhalv10017591m.g.v1.0, Thhalv10017616m.g.v1.0, Thhalv10017621m.g.v1.0, Thhalv10017648m.g.v1.0, Thhalv10017704m.g.v1.0, Thhalv10017708m.g.v1.0, Thhalv10017748m.g.v1.0, Thhalv10017764m.g.v1.0, Thhalv10017773m.g.v1.0, Thhalv10017778m.g.v1.0, Thhalv10017832m.g.v1.0, Thhalv10017911m.g.v1.0, Thhalv10017955m.g.v1.0, Thhalv10027506m.g.v1.0, Thhalv10029145m.g.v1.0, Thhalv10029154m.g.v1.0, Thhalv10029170m.g.v1.0, Thhalv10029266m.g.v1.0, Thhalv10029317m.g.v1.0, Thhalv10029396m.g.v1.0, Thhalv10029437m.g.v1.0, Thhalv10029470m.g.v1.0, Thhalv10029517m.g.v1.0, Thhalv10029520m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g12680.v2.2, Sp5g22490.v2.2
Brassicaceae	Brassica nigra	12	BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... BniB05g064040.2N, BniB05g064060.2N, BniB05g064070.2N, BniB06g019990.2N, BniB06g020020.2N, BniB08g016880.2N, BniB08g018650.2N, BniB08g018660.2N, BniB08g018680.2N