Basic Information
Locus ID:
BniB08g012820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 5917408 | 5918530 | - | BniB08g012820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 23,240.65 Da | 52.99 | 64.14 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 105 | 144 | 2.6E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 147 | 5.3E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 156 | 3.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 67 | 145 | 3.8E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 60 | 151 | 16.979795 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 101 | - | - |
| Coils | Coil | Coil | 79 | 100 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_018476354.1 | PREDICTED: uncharacterized protein LOC108847576 [Raphanus sativus] | 0 |
| TrEMBL | A0A816I7U4 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C03P14000.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology