Basic Information
Locus ID:
BniB08g012450.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 5772580 | 5773767 | - | BniB08g012450.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 46,855.15 Da | 33.97 | 82.33 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 208 | 372 | 1.3E-22 | IPR006527 |
| Pfam | PF00646 | F-box domain | 4 | 34 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 51 | 3.01E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 59 | 2.0E-5 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 0.007 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 106 | 352 | 1.2E-39 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 49 | 9.656436 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 395 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11620.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018475647.1 | PREDICTED: putative F-box/LRR-repeat/kelch-repeat protein At1g11620 [Raphanus sativus] | 0 |
| Q9SAB5 | Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana OX=3702 GN=At1g11620 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7WM56 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004573 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31510.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000539m.g.v1.0, Thhalv10011016m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 5 | BniB02g006350.2N, BniB08g012450.2N, BniB08g064620.2N ... |