Basic Information
Locus ID:
BniB08g011440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 5310788 | 5312616 | + | BniB08g011440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 33,146.60 Da | 57.64 | 51.52 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 207 | 265 | 3.2E-25 | IPR039512 |
| Pfam | PF14634 | zinc-RING finger domain | 159 | 204 | 2.4E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 24 | 105 | 1.2E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 208 | 2.88E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 20 | 95 | 8.11E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 96 | 153 | 9.55E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 205 | 2.3E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 231 | 271 | 1.6E-18 | - |
| SMART | SM00184 | ring_2 | 160 | 202 | 3.6E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 95 | 159 | 34.276047 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 17 | 93 | 25.65399 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 203 | 11.530333 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 289 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_009131897.1 | E3 ubiquitin-protein ligase RZFP34 [Brassica rapa] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WSH6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004688 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology