Basic Information
Locus ID:
BniB08g010970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 5060095 | 5064889 | - | BniB08g010970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 97,748.49 Da | 50.59 | 80.44 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 698 | 866 | 2.32102E-54 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 277 | 865 | 3.7E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 275 | 867 | 1.14E-107 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 267 | 507 | 1.8E-65 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 592 | 871 | 8.3E-56 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 277 | 868 | 56.597393 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 278 | 293 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 811 | 828 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 252 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_018476770.1 | PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 8 [Raphanus sativus] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7WSL0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004748 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology