Basic Information
Locus ID:
BniB08g009410.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 4391841 | 4394106 | + | BniB08g009410.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 31,205.38 Da | 60.60 | 50.67 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 200 | 258 | 7.2E-27 | IPR039512 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 153 | 195 | 5.4E-5 | IPR018957 |
| Pfam | PF05495 | CHY zinc finger | 18 | 98 | 7.0E-21 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 87 | 3.92E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 202 | 3.89E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 89 | 146 | 3.92E-20 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 215 | 1.5E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 224 | 262 | 5.3E-18 | - |
| SMART | SM00184 | ring_2 | 153 | 195 | 8.3E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 86 | 25.728613 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 196 | 11.323791 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 88 | 152 | 34.261566 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_018472586.1 | PREDICTED: E3 ubiquitin-protein ligase MIEL1 [Raphanus sativus] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0MM69 | E3 ubiquitin-protein ligase MIEL1 OS=Raphanus sativus OX=3726 GN=LOC108843925 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology