Basic Information
Locus ID:
BniB08g008720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 4117126 | 4118112 | - | BniB08g008720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 35,603.99 Da | 63.22 | 71.04 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 132 | 175 | 1.4777E-18 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 175 | 8.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 181 | 4.54E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 181 | 4.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 174 | 5.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 175 | 12.976127 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 254 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009131602.1 | RING-H2 finger protein ATL52 [Brassica rapa] | 0 |
| Q9LF64 | RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8BFV5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_004907 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology