Basic Information
Locus ID:
BniB08g008180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
nucleic acid binding nucleotide binding oxidoreductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 3883171 | 3885550 | + | BniB08g008180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 33,995.04 Da | 38.46 | 73.93 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 70 | 128 | 2.1E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 145 | 4.57E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 65 | 166 | 1.2E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 68 | 134 | 5.2E-11 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 67 | 138 | 13.003776 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 318 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16840.3 | binding partner of acd11 1. | 0 |
| RefSeq | XP_013681557.2 | binding partner of ACD11 1 [Brassica napus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WR80 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_005247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology